MolNFT v1 · #103150 · protein
Structure of escherichia COLI pgab C-terminal domain in complex with a poly-beta-1,6-N-acetyl-D-glucosamine (pnag) hexamer
4P7R · Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase: “Structure of escherichia COLI pgab C-terminal domain in complex with a poly-beta-1,6-N-acetyl-D-glucosamine…”. X-ray diffraction, 1 ligand (NAG), 1 pocket (best druggability…
- PDB
- 4P7R
- Type
- protein
- Length
- 359 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase
- EC
- 3.5.1.-
- UniProt
- P75906
- Ligands
- NAG
- Pockets
- 1 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase (EC 3.5.1.-) | protein | 359 | 41% helix, 16% strand | P75906 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A
- EDO · 1,2-ethanediol · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 525 | 0.68 | 0.78 | 53 | NAG |
Compared structures
- 4P7R · Structure of Escherichia coli PgaB C-terminal domain in complex with a… · the same entry in another collection · chain A against A, TM-score 1.00
- P75906 · AlphaFold monomer V2.0 prediction for poly-beta-1,6-N-acetyl-D- glucosamine N-deacetylase… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P75906
- Elsewhere: RCSB PDB 4P7R · PDBe 4P7R · UniProt P75906
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.