MolNFT v1 · #103145 · protein

Structure of escherichia COLI pgab C-terminal domain, P212121 crystal form

4P7L · Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase: “Structure of escherichia COLI pgab C-terminal domain, P212121 crystal form”. X-ray diffraction, 1 ligand (CL), 1 pocket (best druggability 0.63). MolNFT v1 #103145 on GenesisL1…

PDB: 4P7L
Type: protein
Length: 357 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase
EC: 3.5.1.-
UniProt: P75906
Ligands: CL
Pockets: 1 · best druggability 0.63

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase (EC 3.5.1.-)	protein	357	41% helix, 16% strand	P75906

Ligands and binding sites

CL · Chloride ion · ion · chains A
EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	397	0.63	0.78	41	empty

Compared structures

4P7L · Structure of Escherichia coli PgaB C-terminal domain, P212121 crystal form · the same entry in another collection · chain A against A, TM-score 1.00
P75906 · AlphaFold monomer V2.0 prediction for poly-beta-1,6-N-acetyl-D- glucosamine N-deacetylase… · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P75906
Elsewhere: RCSB PDB 4P7L · PDBe 4P7L · UniProt P75906

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