MolNFT v1 · #103065 · protein
Octomer formed by a macrocyclic peptide derived from beta-2- microglobulin (63-69) - (ORN)YLL(PHI)YTE(ORN)KVT(MVA)TVK
4P4Z · Cyclic hexadecapeptide (ORN)YLL(PHI)YTE(ORN)KVT(MVA)TVK: “Octomer formed by a macrocyclic peptide derived from beta-2- microglobulin (63-69)…”. X-ray diffraction, 2 ligands (NA, PO4). MolNFT v1 #103065 on GenesisL1: 3D structure…
- PDB
- 4P4Z
- Type
- protein
- Length
- 192 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cyclic hexadecapeptide (ORN)YLL(PHI)YTE(ORN)KVT(MVA)TVK
- Ligands
- NA, PO4
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 69% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L | Cyclic hexadecapeptide (ORN)YLL(PHI)YTE(ORN)KVT(MVA)TVK | protein | 16 | 0% helix, 69% strand | — |
Ligands and binding sites
- NA · Sodium ion · metal · 3 copies · chains B, D, E, K, H, I
- PO4 · Phosphate ion · ion · 5 copies · chains A, F, G, B, D, E, K, C, J, L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
35 interfaces between chains.
- I–J · 316 Ų buried · 0 hydrogen bonds · protein-protein
- G–H · 316 Ų buried · 0 hydrogen bonds · protein-protein
- E–F · 314 Ų buried · 0 hydrogen bonds · protein-protein
- B–C · 309 Ų buried · 1 hydrogen bond · protein-protein
- K–L · 305 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 48 modified (nonstandard, methylation).
Compared structures
- 4P4Z · Octomer formed by a macrocyclic peptide derived from beta-2-microglobulin (63-69)… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4P4Z · PDBe 4P4Z
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.