MolNFT v1 · #103061 · protein
Hexamer formed by a macrocyclic peptide derived from beta-2- microglobulin (63-69) - (ORN)YLL(PHI)YTE(ORN)KVA(MAA)AVK
4P4V · Cyclic hexadecapeptide (ORN)YLL(PHI)YTE(ORN)KVA(MAA)AVK: “Hexamer formed by a macrocyclic peptide derived from beta-2- microglobulin (63-69)…”. X-ray diffraction, 2 ligands (SO4, CL). MolNFT v1 #103061 on GenesisL1: 3D structure…
- PDB
- 4P4V
- Type
- protein
- Length
- 48 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cyclic hexadecapeptide (ORN)YLL(PHI)YTE(ORN)KVA(MAA)AVK
- Ligands
- SO4, CL
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 56% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Cyclic hexadecapeptide (ORN)YLL(PHI)YTE(ORN)KVA(MAA)AVK | protein | 16 | 0% helix, 56% strand | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 3 copies · chains A, B, C
- CL · Chloride ion · ion · 3 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
3 interfaces between chains.
- A–B · 373 Ų buried · 8 hydrogen bonds · protein-protein
- A–C · 244 Ų buried · 0 hydrogen bonds · protein-protein
- B–C · 192 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 modified (nonstandard).
Compared structures
- 4P4V · Hexamer formed by a macrocyclic peptide derived from beta-2-microglobulin (63-69)… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4P4V · PDBe 4P4V
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