MolNFT v1 · #103016 · protein

Structure of ancestral pyrr protein (plumpyrr)

4P3K · Ancestral pyrr protein (plum): “Structure of ancestral pyrr protein (plumpyrr)”. X-ray diffraction, 2 ligands (NA, SO4), 1 pocket (best druggability 0.61). MolNFT v1 #103016 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 4P3K
Type: protein
Length: 178 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ancestral pyrr protein (plum)
Ligands: NA, SO4
Pockets: 1 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 30% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ancestral pyrr protein (plum)	protein	178	30% helix, 35% strand	—

Ligands and binding sites

NA · Sodium ion · metal · chains A
SO4 · Sulfate ion · ion · 2 copies · chains A
1PE · Pentaethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	302	0.61	0.79	30	SO4, NA

Compared structures

4P3K · Structure of ancestral PyrR protein (PLUMPyrR) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 4P3K · PDBe 4P3K

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