MolNFT v1 · #102920 · protein
Crystal structure of an evolved putative penicillin-binding protein homolog, RV2911, from mycobacterium tuberculosis
4P0M · D-alanyl-D-alanine carboxypeptidase: “Crystal structure of an evolved putative penicillin-binding protein homolog, RV2911, from mycobacterium…”. X-ray diffraction, 1 pocket (best druggability 0.34). MolNFT v1 #102920 on GenesisL1…
- PDB
- 4P0M
- Type
- protein
- Length
- 263 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- D-alanyl-D-alanine carboxypeptidase
- EC
- 3.4.16.4
- UniProt
- Q7D6F2
- Pockets
- 1 · best druggability 0.34
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | protein | 263 | 35% helix, 25% strand | Q7D6F2 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 75 | 0.34 | 0.75 | 20 | empty |
Modifications
Observed in the structure: 7 modified (engineered, nonstandard).
Compared structures
- 4P0M · Crystal structure of an evolved putative penicillin-binding protein homolog, Rv2911, from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7D6F2
- Elsewhere: RCSB PDB 4P0M · PDBe 4P0M · UniProt Q7D6F2
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