MolNFT v1 · #102888 · protein
Crystal structure of an a-L-fucosidase GH29 from bacteroides thetaiotaomicron (BT2192) in complex with onptg
4OZO · Putative lipoprotein: “Crystal structure of an a-L-fucosidase GH29 from bacteroides thetaiotaomicron (BT2192) in complex with onptg”. X-ray diffraction, 1 ligand (OTN), 8 pockets (best druggability 0.53). MolNFT v1 #102888 on…
- PDB
- 4OZO
- Type
- protein
- Length
- 918 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative lipoprotein
- EC
- 3.2.1.111
- UniProt
- Q8A5P6
- Ligands
- OTN
- Pockets
- 8 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Putative lipoprotein (EC 3.2.1.111) | protein | 459 | 31% helix, 24% strand | Q8A5P6 |
Ligands and binding sites
- OTN · 2-nitrophenyl 1-thio-beta-D-galactopyranoside · ligand · 2 copies · chains A, B
- GOL · Glycerol · additive · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 191 | 0.53 | 0.79 | 28 | empty |
| 2 | 253 | 0.53 | 0.76 | 45 | empty |
| 3 | 94 | 0.50 | 0.82 | 24 | GOL, OTN |
| 4 | 90 | 0.50 | 0.82 | 24 | GOL, OTN |
| 5 | 192 | 0.49 | 0.76 | 38 | empty |
Interfaces
1 interface between chains.
- A–B · 630 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 4OZO · Crystal structure of an a-L-fucosidase GH29 from Bacteroides thetaiotaomicron (BT2192) in… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8A5P6
- Elsewhere: RCSB PDB 4OZO · PDBe 4OZO · UniProt Q8A5P6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.