MolNFT v1 · #102872 · protein
Structure of the branched intermediate in protein splicing
4OZ6 · Mxe gyra intein: “Structure of the branched intermediate in protein splicing”. X-ray diffraction, 1 ligand (MG), 1 pocket (best druggability 0.27). MolNFT v1 #102872 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4OZ6
- Type
- protein
- Length
- 176 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mxe gyra intein; Ala-met-arg-tyr
- EC
- 5.99.1.3
- UniProt
- P72065
- Ligands
- MG
- Pockets
- 1 · best druggability 0.27
Structure
x-ray diffraction · 2 distinct chains · 4% helix, 50% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mxe gyra intein (EC 5.99.1.3) | protein | 172 | 4% helix, 51% strand | P72065 |
| B | Ala-met-arg-tyr (EC 5.99.1.3) | protein | 4 | 0% helix, 0% strand | P72065 |
Ligands and binding sites
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 55 | 0.27 | 0.73 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 232 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 modified (nonstandard).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P72065
- Elsewhere: RCSB PDB 4OZ6 · PDBe 4OZ6 · UniProt P72065
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