MolNFT v1 · #102871 · protein
Bacillus subtilis hmob
4OZ5: “Bacillus subtilis hmob”. X-ray diffraction, 1 ligand (HEM), 3 pockets (best druggability 0.69). MolNFT v1 #102871 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4OZ5
- Type
- protein
- Length
- 155 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Bacillus subtilis hmob
- UniProt
- D5N3U6
- Ligands
- HEM
- Pockets
- 3 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 17% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Bacillus subtilis hmob | protein | 155 | 17% helix, 41% strand | D5N3U6 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 270 | 0.69 | 0.83 | 30 | HEM |
| 2 | 52 | 0.28 | 0.75 | 15 | empty |
| 3 | 53 | 0.25 | 0.72 | 15 | empty |
Compared structures
- 4OZ5 · Bacillus subtilis HmoB · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D5N3U6
- Elsewhere: RCSB PDB 4OZ5 · PDBe 4OZ5 · UniProt D5N3U6
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