MolNFT v1 · #10274 · protein
Crystal structure of pyrazinamidase of pyrococcus horikoshii in complex with zinc
1IM5 · 180AA long hypothetical PYRAZINAMIDASE/NICOTINAMIDASE: “Crystal structure of pyrazinamidase of pyrococcus horikoshii in complex with zinc”. X-ray diffraction, 1 ligand (ZN), 1 pocket (best druggability 0.67). MolNFT v1 #10274 on…
- PDB
- 1IM5
- Type
- protein
- Length
- 179 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 180AA long hypothetical PYRAZINAMIDASE/NICOTINAMIDASE
- EC
- 3.5.1.19
- UniProt
- O58727
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 180AA long hypothetical PYRAZINAMIDASE/NICOTINAMIDASE (EC 3.5.1.19) | protein | 179 | 34% helix, 25% strand | O58727 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 92 | 0.67 | 0.91 | 21 | empty |
Compared structures
- 1IM5 · Crystal Structure of Pyrazinamidase of Pyrococcus horikoshii in Complex with Zinc · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O58727
- Elsewhere: RCSB PDB 1IM5 · PDBe 1IM5 · UniProt O58727
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