MolNFT v1 · #102617 · protein
Structure of influenza B PB2 cap-binding domain with Q325F mutation complex with M7GDP
4OR4 · Polymerase basic protein 2: “Structure of influenza B PB2 cap-binding domain with Q325F mutation complex with M7GDP”. X-ray diffraction, 1 ligand (M7G), 3 pockets (best druggability 0.64). MolNFT v1 #102617 on GenesisL1: 3D…
- PDB
- 4OR4
- Type
- protein
- Length
- 326 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polymerase basic protein 2
- Ligands
- M7G
- Pockets
- 3 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 24% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Polymerase basic protein 2 | protein | 163 | 24% helix, 42% strand | — |
Ligands and binding sites
- M7G · 7N-methyl-8-hydroguanosine-5'-diphosphate · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 521 | 0.64 | 0.76 | 44 | empty |
| 2 | 98 | 0.40 | 0.76 | 20 | M7G |
| 3 | 88 | 0.36 | 0.75 | 17 | M7G |
Interfaces
1 interface between chains.
- A–B · 381 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 4OR4 · Structure of Influenza B PB2 cap-binding domain with Q325F mutation complex with m7GDP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4OR4 · PDBe 4OR4
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