MolNFT v1 · #102540 · protein
Crystal structure of P domain from norovirus strain SAGA4
4OOX · VP1: “Crystal structure of P domain from norovirus strain SAGA4”. X-ray diffraction, 1 pocket (best druggability 0.32). MolNFT v1 #102540 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4OOX
- Type
- protein
- Length
- 308 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- VP1
- UniProt
- B5BTT5
- Pockets
- 1 · best druggability 0.32
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | VP1 | protein | 308 | 6% helix, 35% strand | B5BTT5 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 8 copies · chains A
- ACT · Acetate ion · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 53 | 0.32 | 0.77 | 19 | EDO |
Compared structures
- 4OOX · Crystal structure of P domain from norovirus strain Saga4 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B5BTT5
- Elsewhere: RCSB PDB 4OOX · PDBe 4OOX · UniProt B5BTT5
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.