MolNFT v1 · #10244 · protein

Structure of ricin a chain bound with inhibitor 7- deazaguanine

1IL3: “Structure of ricin a chain bound with inhibitor 7- deazaguanine”. X-ray diffraction, 1 ligand (7DG), 2 pockets (best druggability 0.57). MolNFT v1 #10244 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1IL3
Type: protein
Length: 267 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ricin a chain
EC: 3.2.2.22
UniProt: P02879
Ligands: 7DG
Pockets: 2 · best druggability 0.57

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ricin a chain (EC 3.2.2.22)	protein	267	40% helix, 22% strand	P02879

Ligands and binding sites

7DG · 7-deazaguanine · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	224	0.57	0.79	36	7DG
2	53	0.32	0.77	13	empty

Compared structures

1IL3 · Structure of ricin a chain bound with inhibitor 7-deazaguanine · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02879
Elsewhere: RCSB PDB 1IL3 · PDBe 1IL3 · UniProt P02879

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