MolNFT v1 · #102364 · RNA

Crystal structure of twister ribozyme

4OJI · RNA (52-mer): “Crystal structure of twister ribozyme”. X-ray diffraction, 1 ligand (MG), 4 pockets (best druggability 0.58). MolNFT v1 #102364 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4OJI
Type: RNA
Length: 52 nucleotides
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (52-mer)
Ligands: MG
Pockets: 4 · best druggability 0.58

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA (52-mer)	rna	52	—	—

Ligands and binding sites

MG · Magnesium ion · metal · 5 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	195	0.58	0.82	17	MG
2	196	0.50	0.78	19	MG
3	90	0.38	0.78	13	empty
4	87	0.37	0.78	13	MG

Compared structures

4OJI · Crystal Structure of Twister Ribozyme · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 4OJI · PDBe 4OJI

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