MolNFT v1 · #102302 · protein
Crystal structure of chloroplast triose phosphate isomerase from arabidopsis thaliana
4OHQ · Triosephosphate isomerase, chloroplastic: “Crystal structure of chloroplast triose phosphate isomerase from arabidopsis thaliana”. X-ray diffraction, 3 pockets (best druggability 0.45). MolNFT v1 #102302 on GenesisL1: 3D structure…
- PDB
- 4OHQ
- Type
- protein
- Length
- 501 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Triosephosphate isomerase, chloroplastic
- EC
- 5.3.1.1
- UniProt
- Q9SKP6
- Pockets
- 3 · best druggability 0.45
Structure
x-ray diffraction · 2 distinct chains · 46% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Triosephosphate isomerase, chloroplastic (EC 5.3.1.1) | protein | 250 | 45% helix, 16% strand | Q9SKP6 |
| B | Triosephosphate isomerase, chloroplastic (EC 5.3.1.1) | protein | 251 | 46% helix, 16% strand | Q9SKP6 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 110 | 0.45 | 0.78 | 28 | empty |
| 2 | 90 | 0.37 | 0.76 | 23 | empty |
| 3 | 58 | 0.36 | 0.79 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 1664 Ų buried · 33 hydrogen bonds · protein-protein
Compared structures
- 4OHQ · Crystal structure of chloroplast triose phosphate isomerase from Arabidopsis thaliana · the same entry in another collection · chain A against A, TM-score 1.00
- Q9SKP6 · AlphaFold monomer V2.0 prediction for triosephosphate isomerase, chloroplastic (Q9SKP6) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9SKP6
- Elsewhere: RCSB PDB 4OHQ · PDBe 4OHQ · UniProt Q9SKP6
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