MolNFT v1 · #101578 · protein

Predicting protein conformational response in prospective ligand discovery.

4NVL · Cytochrome C peroxidase: “Predicting protein conformational response in prospective ligand discovery.”. X-ray diffraction, 3 ligands (2NZ, HEM, PO4), 2 pockets (best druggability 0.82). MolNFT v1 #101578 on GenesisL1: 3D structure…

PDB: 4NVL
Type: protein
Length: 289 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome C peroxidase
UniProt: B3LRE1
Ligands: 2NZ, HEM, PO4
Pockets: 2 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 51% helix, 7% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome C peroxidase	protein	289	51% helix, 7% strand	B3LRE1

Ligands and binding sites

2NZ · 1-(1H-benzimidazol-1-yl)propan-2-one · ligand · 2 copies · chains A
HEM · Protoporphyrin IX containing Fe · ligand · chains A
PO4 · Phosphate ion · ion · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	498	0.82	0.89	60	HEM, 2NZ
2	89	0.40	0.77	16	PO4

Compared structures

4NVL · Predicting protein conformational response in prospective ligand discovery. · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B3LRE1
Elsewhere: RCSB PDB 4NVL · PDBe 4NVL · UniProt B3LRE1

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