MolNFT v1 · #101494 · protein

Crystal structure of arabidopsis ACD11 (accelerated-cell-death 11) complexed with lyso-sphingomyelin (D18:1) at 2.4 ångström resolution

4NT2: “Crystal structure of arabidopsis ACD11 (accelerated-cell-death 11) complexed with lyso-sphingomyelin (D18:1)…”. X-ray diffraction, 2 ligands (SPU, SO4). MolNFT v1 #101494 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4NT2
Type: protein
Length: 200 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Accelerated-cell-death 11
UniProt: O64587
Ligands: SPU, SO4

Structure

x-ray diffraction · 1 distinct chain · 74% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Accelerated-cell-death 11	protein	200	74% helix, 1% strand	O64587

Ligands and binding sites

SPU · 2-{[(R)-{[(2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl]oxy}(hydroxy)phosphoryl]oxy}-N,N,N-trimethylethanaminium · ligand · 2 copies · chains A
SO4 · Sulfate ion · ion · 5 copies · chains A
EDO · 1,2-ethanediol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

4NT2 · Crystal structure of Arabidopsis ACD11 (accelerated-cell-death 11) complexed with… · the same entry in another collection · chain A against A, TM-score 1.00
O64587 · AlphaFold monomer V2.0 prediction for accelerated cell death 11 (O64587) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O64587
Elsewhere: RCSB PDB 4NT2 · PDBe 4NT2 · UniProt O64587

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