MolNFT v1 · #101312 · protein

Apo structure of obca

4NNA · Obca, oxalate biosynthetic component a: “Apo structure of obca”. X-ray diffraction, 1 ligand (MG), 5 pockets (best druggability 0.71). MolNFT v1 #101312 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4NNA
Type: protein
Length: 498 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Obca, oxalate biosynthetic component a
EC: 4.1.3.-
UniProt: C5AJX5
Ligands: MG
Pockets: 5 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Obca, oxalate biosynthetic component a (EC 4.1.3.-)	protein	498	39% helix, 21% strand	C5AJX5

Ligands and binding sites

MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	582	0.71	0.80	63	MG
2	98	0.51	0.82	19	empty
3	139	0.49	0.78	33	empty
4	51	0.27	0.74	15	empty
5	50	0.26	0.74	13	empty

Modifications

Observed in the structure: 11 modified (engineered, methylation).

Compared structures

4NNA · Apo structure of ObcA · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C5AJX5
Elsewhere: RCSB PDB 4NNA · PDBe 4NNA · UniProt C5AJX5

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