MolNFT v1 · #101135 · protein

Crystal structure of glutathione transferase bbta-3750 from bradyrhizobium sp., target efi-507290, with one glutathione bound

4NHZ · Putative glutathione S-transferase enzyme with thioredoxin…: “Crystal structure of glutathione transferase bbta-3750 from bradyrhizobium sp., target efi-507290, with one…”. X-ray diffraction, 1 ligand (GSH), 20 pockets (best…

PDB: 4NHZ
Type: protein
Length: 3,734 residues
Chains: 16
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative glutathione S-transferase enzyme with thioredoxin- like domain
UniProt: A5EI34
Ligands: GSH
Pockets: 20 · best druggability 0.80

Structure

x-ray diffraction · 5 distinct chains · 55% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, D, E, I, N, P	Putative glutathione S-transferase enzyme with thioredoxin- like domain	protein	232	53% helix, 9% strand	A5EI34
B	Putative glutathione S-transferase enzyme with thioredoxin- like domain	protein	244	57% helix, 11% strand	A5EI34
C, L	Putative glutathione S-transferase enzyme with thioredoxin- like domain	protein	233	57% helix, 12% strand	A5EI34
F, G, J, K, M, O	Putative glutathione S-transferase enzyme with thioredoxin- like domain	protein	231	55% helix, 10% strand	A5EI34
H	Putative glutathione S-transferase enzyme with thioredoxin- like domain	protein	246	55% helix, 9% strand	A5EI34

Ligands and binding sites

GSH · Glutathione · ligand · 16 copies · chains A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	681	0.80	0.84	51	empty
2	583	0.76	0.83	44	empty
3	694	0.76	0.81	54	empty
4	641	0.75	0.81	45	empty
5	644	0.75	0.81	46	empty

Interfaces

29 interfaces between chains.

G–H · 1914 Å² buried · 19 hydrogen bonds · protein-protein
A–B · 1909 Å² buried · 22 hydrogen bonds · protein-protein
M–N · 1908 Å² buried · 18 hydrogen bonds · protein-protein
C–D · 1906 Å² buried · 21 hydrogen bonds · protein-protein
E–F · 1896 Å² buried · 21 hydrogen bonds · protein-protein

Compared structures

4NHZ · Crystal structure of glutathione transferase BBTA-3750 from Bradyrhizobium sp., Target… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A5EI34
Elsewhere: RCSB PDB 4NHZ · PDBe 4NHZ · UniProt A5EI34

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.