MolNFT v1 · #101125 · protein

X-ray structure of the complex between the hen egg white lysozyme and pentachlorocarbonyliridate (III) (4 days)

4NHP · Lysozyme C: “X-ray structure of the complex between the hen egg white lysozyme and pentachlorocarbonyliridate (III) (4…”. X-ray diffraction, 3 ligands (2T8, NA, CL), 1 pocket (best druggability 0.35). MolNFT v1 #101125 on GenesisL1…

PDB: 4NHP
Type: protein
Length: 129 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lysozyme C
EC: 3.2.1.17
UniProt: P00698
Ligands: 2T8, NA, CL
Pockets: 1 · best druggability 0.35

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lysozyme C (EC 3.2.1.17)	protein	129	41% helix, 11% strand	P00698

Ligands and binding sites

2T8 · carbonyl(tetrachloro)oxidoiridium · ligand · 3 copies · chains A
NA · Sodium ion · metal · chains A
CL · Chloride ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	82	0.35	0.75	20	empty

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

4NHP · X-ray structure of the complex between the hen egg white lysozyme and… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00698
Elsewhere: RCSB PDB 4NHP · PDBe 4NHP · UniProt P00698

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