MolNFT v1 · #101056 · RNA
Crystal structure analysis of the 16MER gcagncuuaagucugc containing 7- triazolyl-8-aza-7-deazaadenosine
4NFQ · GCAG(7AT)CUUAAGUCUGC: “Crystal structure analysis of the 16MER gcagncuuaagucugc containing 7- triazolyl-8-aza-7-deazaadenosine”. X-ray diffraction, 2 pockets (best druggability 0.38). MolNFT v1 #101056 on GenesisL1: 3D structure…
- PDB
- 4NFQ
- Type
- RNA
- Length
- 48 nucleotides
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GCAG(7AT)CUUAAGUCUGC
- Pockets
- 2 · best druggability 0.38
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | GCAG(7AT)CUUAAGUCUGC | rna | 16 | — | — |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 160 | 0.38 | 0.73 | 11 | empty |
| 2 | 83 | 0.29 | 0.73 | 11 | empty |
Interfaces
2 interfaces between chains.
- B–C · 751 Ų buried · 67 hydrogen bonds · nucleic-nucleic
- A–C · 99 Ų buried · 1 hydrogen bond · nucleic-nucleic
Modifications
Observed in the structure: 3 modified (nucleotide modification).
Compared structures
- 4NFQ · Crystal Structure Analysis of the 16mer GCAGNCUUAAGUCUGC containing… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4NFQ · PDBe 4NFQ
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