MolNFT v1 · #100913 · protein
Crystal structure of uvb photoreceptor UVR8 and light-induced structural changes at 180K
4NBM · Ultraviolet-B receptor UVR8: “Crystal structure of uvb photoreceptor UVR8 and light-induced structural changes at 180K”. X-ray diffraction, 1 ligand (MG), 10 pockets (best druggability 0.83). MolNFT v1 #100913 on GenesisL1: 3D…
- PDB
- 4NBM
- Type
- protein
- Length
- 1,476 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ultraviolet-B receptor UVR8
- UniProt
- Q9FN03
- Ligands
- MG
- Pockets
- 10 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Ultraviolet-B receptor UVR8 | protein | 369 | 6% helix, 44% strand | Q9FN03 |
Ligands and binding sites
- MG · Magnesium ion · metal · 23 copies · chains A, C, D, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
10 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 511 | 0.83 | 0.90 | 64 | MG |
| 2 | 509 | 0.83 | 0.89 | 67 | MG |
| 3 | 524 | 0.76 | 0.84 | 46 | MG |
| 4 | 489 | 0.76 | 0.84 | 46 | MG |
| 5 | 479 | 0.75 | 0.84 | 47 | MG |
Interfaces
5 interfaces between chains.
- A–B · 1436 Ų buried · 38 hydrogen bonds · protein-protein
- C–D · 1422 Ų buried · 37 hydrogen bonds · protein-protein
- A–C · 303 Ų buried · 2 hydrogen bonds · protein-protein
- B–C · 16 Ų buried · 0 hydrogen bonds · protein-protein
- A–D · 12 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 4NBM · Crystal structure of UVB photoreceptor UVR8 and light-induced structural changes at 180K · the same entry in another collection · chain A against A, TM-score 1.00
- Q9FN03 · AlphaFold monomer V2.0 prediction for ultraviolet-B receptor UVR8 (Q9FN03) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9FN03
- Elsewhere: RCSB PDB 4NBM · PDBe 4NBM · UniProt Q9FN03
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