MolNFT v1 · #100793 · protein

Crystal structure of V30M mutant human transthyretin complexed with glabridin

4N87: “Crystal structure of V30M mutant human transthyretin complexed with glabridin”. X-ray diffraction, 1 ligand (GBJ), 2 pockets (best druggability 0.38). MolNFT v1 #100793 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4N87
Type: protein
Length: 230 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Transthyretin
UniProt: P02766
Ligands: GBJ
Pockets: 2 · best druggability 0.38

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 53% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Transthyretin	protein	115	6% helix, 53% strand	P02766

Ligands and binding sites

GBJ · 4-[(3R)-8,8-dimethyl-3,4-dihydro-2H,8H-pyrano[2,3-f]chromen-3-yl]benzene-1,3-diol · ligand · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	83	0.38	0.77	17	empty
2	82	0.36	0.76	17	empty

Interfaces

1 interface between chains.

A–B · 922 Å² buried · 23 hydrogen bonds · protein-protein

Compared structures

4N87 · Crystal structure of V30M mutant human transthyretin complexed with glabridin · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02766
Elsewhere: RCSB PDB 4N87 · PDBe 4N87 · UniProt P02766

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