MolNFT v1 · #10079 · protein

Crystal structure of pathogenesis-related protein LLPR10.1B from yellow lupine

1IFV · Protein LLR18B: “Crystal structure of pathogenesis-related protein LLPR10.1B from yellow lupine”. X-ray diffraction, 4 pockets (best druggability 0.75). MolNFT v1 #10079 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1IFV
Type: protein
Length: 310 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein LLR18B
UniProt: P52779
Pockets: 4 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 28% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Protein LLR18B	protein	155	28% helix, 43% strand	P52779

Pockets

4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	85	0.75	0.96	20	empty
2	69	0.73	0.97	20	empty
3	392	0.62	0.77	56	empty
4	237	0.56	0.78	34	empty

Interfaces

1 interface between chains.

A–B · 525 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

1IFV · Crystal structure of pathogenesis-related protein LLPR10.1B from yellow lupine · the same entry in another collection · chain A against A, TM-score 1.00
P52779 · AlphaFold monomer V2.0 prediction for protein LLR18B (P52779) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P52779
Elsewhere: RCSB PDB 1IFV · PDBe 1IFV · UniProt P52779

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