MolNFT v1 · #100761 · protein
Structure of the E-1-hydroxy-2-methyl-but-2-enyl-4-diphosphate reductase from plasmodium falciparum
4N7B · Lytb: “Structure of the E-1-hydroxy-2-methyl-but-2-enyl-4-diphosphate reductase from plasmodium falciparum”. X-ray diffraction, 3 ligands (F3S, NA, SO4), 1 pocket (best druggability 0.80). MolNFT v1 #100761 on GenesisL1: 3D…
- PDB
- 4N7B
- Type
- protein
- Length
- 318 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lytb
- UniProt
- Q9BJX6
- Ligands
- F3S, NA, SO4
- Pockets
- 1 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lytb | protein | 318 | 43% helix, 19% strand | Q9BJX6 |
Ligands and binding sites
- F3S · FE3-S4 cluster · ligand · chains A
- NA · Sodium ion · metal · 2 copies · chains A
- SO4 · Sulfate ion · ion · 2 copies · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 128 | 0.80 | 0.98 | 25 | F3S, SO4 |
Compared structures
- 4N7B · Structure of the E-1-hydroxy-2-methyl-but-2-enyl-4-diphosphate reductase from Plasmodium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9BJX6
- Elsewhere: RCSB PDB 4N7B · PDBe 4N7B · UniProt Q9BJX6
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