MolNFT v1 · #100644 · protein
Candida albicans superoxide dismutase 5 (SOD5), CU(I)
4N3T · Potential secreted CU/ZN superoxide dismutase: “Candida albicans superoxide dismutase 5 (SOD5), CU(I)”. X-ray diffraction, 2 ligands (CU1, SO4), 1 pocket (best druggability 0.32). MolNFT v1 #100644 on GenesisL1: 3D structure…
- PDB
- 4N3T
- Type
- protein
- Length
- 153 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Potential secreted CU/ZN superoxide dismutase
- UniProt
- Q5AD07
- Ligands
- CU1, SO4
- Pockets
- 1 · best druggability 0.32
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Potential secreted CU/ZN superoxide dismutase | protein | 153 | 10% helix, 36% strand | Q5AD07 |
Ligands and binding sites
- CU1 · Copper (I) ion · metal · chains A
- SO4 · Sulfate ion · ion · 2 copies · chains A
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 62 | 0.32 | 0.76 | 18 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 4N3T · Candida albicans Superoxide Dismutase 5 (SOD5), Cu(I) · the same entry in another collection · chain A against A, TM-score 1.00
- Q5AD07 · AlphaFold monomer V2.0 prediction for cell surface cu-only superoxide dismutase 5 (Q5AD07) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5AD07
- Elsewhere: RCSB PDB 4N3T · PDBe 4N3T · UniProt Q5AD07
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