MolNFT v1 · #100572 · protein
Crystal structure of F88Y obelin mutant from obelia longissima at 2.09 ångström resolution
4N1F: “Crystal structure of F88Y obelin mutant from obelia longissima at 2.09 ångström resolution”. X-ray diffraction, 1 ligand (CZH), 1 pocket (best druggability 0.84). MolNFT v1 #100572 on GenesisL1: 3D structure, binding sites and…
- PDB
- 4N1F
- Type
- protein
- Length
- 186 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Obelin
- UniProt
- Q27709
- Ligands
- CZH
- Pockets
- 1 · best druggability 0.84
Structure
x-ray diffraction · 1 distinct chain · 62% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Obelin | protein | 186 | 62% helix, 3% strand | Q27709 |
Ligands and binding sites
- CZH · C2-hydroperoxy-coelenterazine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 195 | 0.84 | 0.97 | 30 | CZH |
Compared structures
- 4N1F · Crystal Structure of F88Y obelin mutant from Obelia longissima at 2.09 Angstrom resolution · the same entry in another collection · chain A against A, TM-score 1.00
- Q27709 · AlphaFold monomer V2.0 prediction for obelin (Q27709) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q27709
- Elsewhere: RCSB PDB 4N1F · PDBe 4N1F · UniProt Q27709
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