MolNFT v1 · #100425 · protein

Crystal structure of a trap periplasmic solute binding protein from shewanella oneidensis (SO_3134), target efi-510275, with bound succinate

4MX6 · Trap-type C4-DICARBOXYLATE:H+ symport system substrate…: “Crystal structure of a trap periplasmic solute binding protein from shewanella oneidensis (SO_3134), target…”. X-ray diffraction, 1 ligand (CL), 2 pockets (best druggability…

PDB: 4MX6
Type: protein
Length: 305 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Trap-type C4-DICARBOXYLATE:H+ symport system substrate- binding component dctp
UniProt: Q8ECK4
Ligands: CL
Pockets: 2 · best druggability 0.36

Structure

x-ray diffraction · 1 distinct chain · 50% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Trap-type C4-DICARBOXYLATE:H+ symport system substrate- binding component dctp	protein	305	50% helix, 19% strand	Q8ECK4

Ligands and binding sites

CL · Chloride ion · ion · 2 copies · chains A
SIN · Succinic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	69	0.36	0.78	14	empty
2	52	0.26	0.74	16	empty

Compared structures

4MX6 · Crystal structure of a trap periplasmic solute binding protein from shewanella oneidensis… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8ECK4
Elsewhere: RCSB PDB 4MX6 · PDBe 4MX6 · UniProt Q8ECK4

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