MolNFT v1 · #100277 · RNA
RNA 10MER duplex with six 2'-5'-linkages
4MSR: “RNA 10MER duplex with six 2'-5'-linkages”. X-ray diffraction, 1 ligand (SR), 1 pocket (best druggability 0.41). MolNFT v1 #100277 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4MSR
- Type
- RNA
- Length
- 20 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA 10MER duplex with six 2'-5'-linkages
- Ligands
- SR
- Pockets
- 1 · best druggability 0.41
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | RNA 10MER duplex with six 2'-5'-linkages | rna | 10 | — | — |
Ligands and binding sites
- SR · Strontium ion · metal · 5 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 187 | 0.41 | 0.73 | 17 | SR |
Interfaces
1 interface between chains.
- A–B · 553 Ų buried · 60 hydrogen bonds · nucleic-nucleic
Compared structures
- 4MSR · RNA 10mer duplex with six 2'-5'-linkages · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4MSR · PDBe 4MSR
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