MolNFT v1 · #100163 · protein

Staphyloferrin B precursor biosynthetic enzyme sbnb bound a- ketoglutarate and NAD+

4MPD · Putative ornithine cyclodeaminase: “Staphyloferrin B precursor biosynthetic enzyme sbnb bound a- ketoglutarate and NAD+”. X-ray diffraction, 2 ligands (NAJ, AKG), 1 pocket (best druggability 0.76). MolNFT v1 #100163 on GenesisL1: 3D…

PDB: 4MPD
Type: protein
Length: 318 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative ornithine cyclodeaminase
UniProt: Q8NYS7
Ligands: NAJ, AKG
Pockets: 1 · best druggability 0.76

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative ornithine cyclodeaminase	protein	318	39% helix, 24% strand	Q8NYS7

Ligands and binding sites

NAJ · Nicotinamide-adenine-dinucleotide (acidic form) · ligand · chains A
AKG · 2-oxoglutaric acid · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	624	0.76	0.82	66	NAJ, AKG

Compared structures

4MPD · Staphyloferrin B precursor biosynthetic enzyme SbnB bound a-ketoglutarate and NAD+ · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8NYS7
Elsewhere: RCSB PDB 4MPD · PDBe 4MPD · UniProt Q8NYS7

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