MolNFT v1 · #100090 · protein
Crystal structure of truncated pas domain from S. aureus yycg
4MN6 · Sensor protein kinase walk: “Crystal structure of truncated pas domain from S. aureus yycg”. X-ray diffraction, 1 ligand (ZN), 3 pockets (best druggability 0.36). MolNFT v1 #100090 on GenesisL1: 3D structure, binding sites and…
- PDB
- 4MN6
- Type
- protein
- Length
- 189 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sensor protein kinase walk
- EC
- 2.7.13.3
- UniProt
- Q9RDT3
- Ligands
- ZN
- Pockets
- 3 · best druggability 0.36
Structure
x-ray diffraction · 2 distinct chains · 18% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sensor protein kinase walk (EC 2.7.13.3) | protein | 96 | 18% helix, 39% strand | Q9RDT3 |
| B | Sensor protein kinase walk (EC 2.7.13.3) | protein | 93 | 18% helix, 39% strand | Q9RDT3 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 68 | 0.36 | 0.77 | 18 | empty |
| 2 | 108 | 0.36 | 0.74 | 20 | empty |
| 3 | 50 | 0.28 | 0.75 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 640 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RDT3
- Elsewhere: RCSB PDB 4MN6 · PDBe 4MN6 · UniProt Q9RDT3
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