MolNFT v1 · #530647 · protein

AlphaFold monomer V2.0 prediction for putative acid--amine ligase ygic (P0ADT5)

P0ADT5: “AlphaFold monomer V2.0 prediction for putative acid--amine ligase ygic (P0ADT5)”. 3 pockets (best druggability 0.76). MolNFT v1 #530647 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: P0ADT5
Type: protein
Length: 386 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xf849160D6081641c43ABA768B2b1C10AD3F94E20
Molecule: Putative acid--amine ligase ygic
UniProt: P0ADT5
Pockets: 3 · best druggability 0.76

Structure

1 distinct chain · 32% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative acid--amine ligase ygic	protein	386	32% helix, 28% strand	P0ADT5

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	296	0.76	0.88	54	empty
2	66	0.47	0.83	14	empty
3	50	0.29	0.76	14	empty

Compared structures

7UK8 · Apo form of YgiC from Escherichia coli K-12 · an experimental structure of the same protein · chain A against A, TM-score 0.93
7UKA · YgiC from Escherichia coli K-12 in complex with ADP · an experimental structure of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0ADT5
Elsewhere: UniProt P0ADT5 · AlphaFold DB P0ADT5

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