MolNFT v1 · #530253 · protein
AlphaFold monomer V2.0 prediction for transposon TY3-G gag-pol polyprotein (Q99315)
Q99315: “AlphaFold monomer V2.0 prediction for transposon TY3-G gag-pol polyprotein (Q99315)”. 19 pockets (best druggability 0.77). MolNFT v1 #530253 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q99315
- Type
- protein
- Length
- 1,547 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x71cEF7DAfDD84b59FAEbC7E165BEeDf9b251ccF8
- Molecule
- Transposon TY3-G gag-pol polyprotein
- UniProt
- Q99315
- Pockets
- 19 · best druggability 0.77
Structure
1 distinct chain · 35% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transposon TY3-G gag-pol polyprotein | protein | 1547 | 35% helix, 16% strand | Q99315 |
Pockets
19 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 798 | 0.77 | 0.81 | 71 | empty |
| 2 | 968 | 0.75 | 0.78 | 82 | empty |
| 3 | 966 | 0.74 | 0.77 | 85 | empty |
| 4 | 685 | 0.69 | 0.76 | 68 | empty |
| 5 | 870 | 0.69 | 0.74 | 80 | empty |
Compared structures
- 4OL8 · TY3 reverse transcriptase bound to DNA/RNA · an experimental structure of the same protein · chain A against B, TM-score 0.29
- 4OL8 · Ty3 reverse transcriptase bound to DNA/RNA · an experimental structure of the same protein · chain A against B, TM-score 0.29
- 7Q5B · Cryo-EM structure of Ty3 retrotransposon targeting a TFIIIB-bound tRNA gene · an experimental structure of the same protein · chain A against C, TM-score 0.17
- 7Q5B · Cryo-EM structure of TY3 retrotransposon targeting a tfiiib-bound tRNA gene · an experimental structure of the same protein · chain A against C, TM-score 0.17
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q99315
- Elsewhere: UniProt Q99315 · AlphaFold DB Q99315
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