MolNFT v1 · #502479 · protein
AlphaFold monomer V2.0 prediction for bifunctional endo-1,4-beta- xylanase a (P29127)
P29127 · Bifunctional endo-1,4-beta-xylanase a: “AlphaFold monomer V2.0 prediction for bifunctional endo-1,4-beta- xylanase a (P29127)”. 5 pockets (best druggability 0.74). MolNFT v1 #502479 on GenesisL1: 3D structure, binding sites and…
- Accession
- P29127
- Type
- protein
- Length
- 607 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x331B5A7b5E1464af29Ef9bF02B7486a0F6C9FF8D
- Molecule
- Bifunctional endo-1,4-beta-xylanase a
- UniProt
- P29127
- Pockets
- 5 · best druggability 0.74
Structure
1 distinct chain · 6% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Bifunctional endo-1,4-beta-xylanase a | protein | 607 | 6% helix, 51% strand | P29127 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 724 | 0.74 | 0.79 | 82 | empty |
| 2 | 159 | 0.59 | 0.83 | 36 | empty |
| 3 | 213 | 0.52 | 0.77 | 34 | empty |
| 4 | 56 | 0.32 | 0.76 | 13 | empty |
| 5 | 81 | 0.29 | 0.72 | 20 | empty |
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 2C1F · The structure of the family 11 xylanase from neocallimastix patriciarum · an experimental structure of the same protein · chain A against A, TM-score 0.36
- 2C1F · The structure of the family 11 xylanase from Neocallimastix patriciarum · an experimental structure of the same protein · chain A against A, TM-score 0.36
- 2VG9 · Crystal structure of Loop Swap mutant of Necallimastix patriciarum Xyn11A · an experimental structure of the same protein · chain A against A, TM-score 0.36
- 2VG9 · Crystal structure of loop swap mutant of necallimastix patriciarum XYN11A · an experimental structure of the same protein · chain A against A, TM-score 0.36
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P29127
- Elsewhere: UniProt P29127 · AlphaFold DB P29127
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