MolNFT v1 · #502404 · protein
AlphaFold monomer V2.0 prediction for endo-1,4-beta-xylanase (P40943)
P40943: “AlphaFold monomer V2.0 prediction for endo-1,4-beta-xylanase (P40943)”. 3 pockets (best druggability 0.64). MolNFT v1 #502404 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P40943
- Type
- protein
- Length
- 407 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7782F4817b37743d738e9aF842bf74bd50f2015E
- Molecule
- Endo-1,4-beta-xylanase
- UniProt
- P40943
- Pockets
- 3 · best druggability 0.64
Structure
1 distinct chain · 40% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endo-1,4-beta-xylanase | protein | 407 | 40% helix, 17% strand | P40943 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 387 | 0.64 | 0.79 | 45 | empty |
| 2 | 358 | 0.58 | 0.76 | 38 | empty |
| 3 | 70 | 0.32 | 0.75 | 18 | empty |
Compared structures
- 1HIZ · Xylanase T6 (XT6) from bacillus stearothermophilus · an experimental structure of the same protein · chain A against A, TM-score 0.92
- 1HIZ · Xylanase T6 (Xt6) from Bacillus Stearothermophilus · an experimental structure of the same protein · chain A against A, TM-score 0.92
- 1R85 · Crystal structure of the extracellular xylanase from geobacillus stearothermophilus T-6… · an experimental structure of the same protein · chain A against A, TM-score 0.91
- 1R85 · Crystal structure of the extracellular xylanase from Geobacillus stearothermophilus T-6… · an experimental structure of the same protein · chain A against A, TM-score 0.91
- 4PRW · Xylanase T6 (XT6) from Geobacillus Stearothermophilus in complex with xylohexaose · an experimental structure of the same protein · chain A against A, TM-score 0.91
- 4PRW · Xylanase T6 (XT6) from geobacillus stearothermophilus in complex with xylohexaose · an experimental structure of the same protein · chain A against A, TM-score 0.91
- 4PUD · Extracellulr xylanase from geobacillus stearothermophilus: E159Q mutant, with… · an experimental structure of the same protein · chain A against A, TM-score 0.91
- 4PUD · Extracellulr Xylanase from Geobacillus stearothermophilus: E159Q mutant, with… · an experimental structure of the same protein · chain A against A, TM-score 0.91
- 1R87 · Crystal structure of the extracellular xylanase from geobacillus stearothermophilus T-6… · an experimental structure of the same protein · chain A against A, TM-score 0.91
- 1R87 · Crystal structure of the extracellular xylanase from Geobacillus stearothermophilus T-6… · an experimental structure of the same protein · chain A against A, TM-score 0.91
- 1R86 · Crystal structure of the extracellular xylanase from Geobacillus stearothermophilus T-6… · an experimental structure of the same protein · chain A against A, TM-score 0.91
- 1R86 · Crystal structure of the extracellular xylanase from geobacillus stearothermophilus T-6… · an experimental structure of the same protein · chain A against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P40943
- Elsewhere: UniProt P40943 · AlphaFold DB P40943
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.