MolNFT v1 · #502241 · protein

AlphaFold monomer V2.0 prediction for xylose isomerase (P56681)

P56681: “AlphaFold monomer V2.0 prediction for xylose isomerase (P56681)”. 4 pockets (best druggability 0.67). MolNFT v1 #502241 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: P56681
Type: protein
Length: 387 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x6b7093847d131cA54365434A74779E95dc6BB401
Molecule: Xylose isomerase
UniProt: P56681
Pockets: 4 · best druggability 0.67

Structure

1 distinct chain · 50% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Xylose isomerase	protein	387	50% helix, 10% strand	P56681

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	539	0.67	0.78	50	empty
2	144	0.47	0.77	18	empty
3	81	0.35	0.75	15	empty
4	57	0.30	0.75	16	empty

Compared structures

1BXC · Xylose isomerase from thermus caldophilus · an experimental structure of the same protein · chain A against A, TM-score 1.00
1BXC · Xylose isomerase from thermus caldophilus · an experimental structure of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P56681
Elsewhere: UniProt P56681 · AlphaFold DB P56681

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