MolNFT v1 · #502098 · protein
AlphaFold monomer V2.0 prediction for xylose isomerase (Q8A9M2)
Q8A9M2: “AlphaFold monomer V2.0 prediction for xylose isomerase (Q8A9M2)”. 4 pockets (best druggability 0.58). MolNFT v1 #502098 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q8A9M2
- Type
- protein
- Length
- 438 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xb8D3B450AC50e83021eF2fc524AAC2745D922097
- Molecule
- Xylose isomerase
- UniProt
- Q8A9M2
- Pockets
- 4 · best druggability 0.58
Structure
1 distinct chain · 48% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Xylose isomerase | protein | 438 | 48% helix, 13% strand | Q8A9M2 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 372 | 0.58 | 0.76 | 47 | empty |
| 2 | 125 | 0.45 | 0.77 | 16 | empty |
| 3 | 53 | 0.28 | 0.75 | 15 | empty |
| 4 | 59 | 0.28 | 0.74 | 19 | empty |
Compared structures
- 4XKM · Crystal structure of Xylose Isomerase from an human intestinal tract microbe Bacteroides… · an experimental structure of the same protein · chain A against D, TM-score 0.99
- 4XKM · Crystal structure of xylose isomerase from an human intestinal tract microbe bacteroides… · an experimental structure of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8A9M2
- Elsewhere: UniProt Q8A9M2 · AlphaFold DB Q8A9M2
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