MolNFT v1 · #497712 · protein
AlphaFold monomer V2.0 prediction for 23S rRNA-specific endonuclease VAPC20 (P0DMV7)
P0DMV7: “AlphaFold monomer V2.0 prediction for 23S rRNA-specific endonuclease VAPC20 (P0DMV7)”. 1 pocket (best druggability 0.31). MolNFT v1 #497712 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P0DMV7
- Type
- protein
- Length
- 131 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x787c856c246D46194820F4350135EC4a88a6Ce76
- Molecule
- 23S rRNA-specific endonuclease VAPC20
- UniProt
- P0DMV7
- Pockets
- 1 · best druggability 0.31
Structure
1 distinct chain · 56% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 23S rRNA-specific endonuclease VAPC20 | protein | 131 | 56% helix, 12% strand | P0DMV7 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 52 | 0.31 | 0.77 | 19 | empty |
Compared structures
- 5WZF · Crystal structure of mycobacterium tuberculosis VAPC20 (RV2549C), sarcin-ricin loop… · an experimental structure of the same protein · chain A against B, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DMV7
- Elsewhere: UniProt P0DMV7 · AlphaFold DB P0DMV7
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