MolNFT v1 · #497028 · protein
AlphaFold monomer V2.0 prediction for very low-density lipoprotein receptor (P98166)
P98166: “AlphaFold monomer V2.0 prediction for very low-density lipoprotein receptor (P98166)”. 6 pockets (best druggability 0.79). MolNFT v1 #497028 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P98166
- Type
- protein
- Length
- 873 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x4189287e431ee4A65E5D53F670eEeDe6017c5c1C
- Molecule
- Very low-density lipoprotein receptor
- UniProt
- P98166
- Pockets
- 6 · best druggability 0.79
Structure
1 distinct chain · 8% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Very low-density lipoprotein receptor | protein | 873 | 8% helix, 26% strand | P98166 |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 429 | 0.79 | 0.88 | 65 | empty |
| 2 | 100 | 0.40 | 0.77 | 23 | empty |
| 3 | 74 | 0.36 | 0.77 | 18 | empty |
| 4 | 70 | 0.34 | 0.76 | 15 | empty |
| 5 | 61 | 0.29 | 0.74 | 19 | empty |
Modifications
Observed in the structure: 33 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P98166
- Elsewhere: UniProt P98166 · AlphaFold DB P98166
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