MolNFT v1 · #496698 · protein
AlphaFold monomer V2.0 prediction for vitellogenin-2 (P05690)
P05690: “AlphaFold monomer V2.0 prediction for vitellogenin-2 (P05690)”. 20 pockets (best druggability 0.85). MolNFT v1 #496698 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P05690
- Type
- protein
- Length
- 1,613 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd91633319BDB0a92cbC4f08DeA734Bf74C030064
- Molecule
- Vitellogenin-2
- UniProt
- P05690
- Pockets
- 20 · best druggability 0.85
Structure
1 distinct chain · 30% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vitellogenin-2 | protein | 1613 | 30% helix, 37% strand | P05690 |
Pockets
20 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1130 | 0.85 | 0.86 | 86 | empty |
| 2 | 1000 | 0.80 | 0.81 | 102 | empty |
| 3 | 1182 | 0.77 | 0.79 | 118 | empty |
| 4 | 81 | 0.76 | 0.98 | 24 | empty |
| 5 | 357 | 0.67 | 0.81 | 49 | empty |
Modifications
Observed in the structure: 8 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P05690
- Elsewhere: UniProt P05690 · AlphaFold DB P05690
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