MolNFT v1 · #496691 · protein
AlphaFold monomer V2.0 prediction for vitellogenin-1 (P87498)
P87498: “AlphaFold monomer V2.0 prediction for vitellogenin-1 (P87498)”. 20 pockets (best druggability 0.81). MolNFT v1 #496691 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P87498
- Type
- protein
- Length
- 1,912 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x35612D34a32C306CA4fc1edA9360D1F717e25950
- Molecule
- Vitellogenin-1
- UniProt
- P87498
- Pockets
- 20 · best druggability 0.81
Structure
1 distinct chain · 22% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vitellogenin-1 | protein | 1912 | 22% helix, 31% strand | P87498 |
Pockets
20 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 927 | 0.81 | 0.82 | 91 | empty |
| 2 | 110 | 0.75 | 0.95 | 28 | empty |
| 3 | 816 | 0.66 | 0.74 | 83 | empty |
| 4 | 271 | 0.63 | 0.81 | 40 | empty |
| 5 | 110 | 0.63 | 0.88 | 24 | empty |
Modifications
Observed in the structure: 13 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P87498
- Elsewhere: UniProt P87498 · AlphaFold DB P87498
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