MolNFT v1 · #496392 · protein
AlphaFold monomer V2.0 prediction for vigilin (Q00341)
Q00341: “AlphaFold monomer V2.0 prediction for vigilin (Q00341)”. 6 pockets (best druggability 0.57). MolNFT v1 #496392 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q00341
- Type
- protein
- Length
- 1,268 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd1f836FeE27f3d90E17339F1a3544259439641A4
- Molecule
- Vigilin
- UniProt
- Q00341
- Pockets
- 6 · best druggability 0.57
Structure
1 distinct chain · 46% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vigilin | protein | 1268 | 46% helix, 19% strand | Q00341 |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 272 | 0.57 | 0.77 | 30 | empty |
| 2 | 142 | 0.40 | 0.74 | 20 | empty |
| 3 | 123 | 0.39 | 0.74 | 16 | empty |
| 4 | 93 | 0.33 | 0.73 | 16 | empty |
| 5 | 88 | 0.32 | 0.73 | 17 | empty |
Compared structures
- 2CTL · Solution structure of the 13TH kh type I domain from human vigilin · an experimental structure of the same protein · chain A against A, TM-score 0.07
- 2CTL · Solution structure of the 13th KH type I domain from human Vigilin · an experimental structure of the same protein · chain A against A, TM-score 0.07
- 2CTK · Solution structure of the 12TH kh type I domain from human vigilin · an experimental structure of the same protein · chain A against A, TM-score 0.07
- 2CTK · Solution structure of the 12th KH type I domain from human Vigilin · an experimental structure of the same protein · chain A against A, TM-score 0.07
- 2CTM · Solution structure of the 14TH kh type I domain from human vigilin · an experimental structure of the same protein · chain A against A, TM-score 0.07
- 2CTM · Solution structure of the 14th KH type I domain from human Vigilin · an experimental structure of the same protein · chain A against A, TM-score 0.07
- 2CTE · Solution structure of the 1st KH type I domain from human Vigilin · an experimental structure of the same protein · chain A against A, TM-score 0.06
- 2CTE · Solution structure of the 1ST kh type I domain from human vigilin · an experimental structure of the same protein · chain A against A, TM-score 0.06
- 2CTJ · Solution structure of the 8th KH type I domain from human Vigilin · an experimental structure of the same protein · chain A against A, TM-score 0.06
- 2CTJ · Solution structure of the 8TH kh type I domain from human vigilin · an experimental structure of the same protein · chain A against A, TM-score 0.06
- 2CTF · Solution structure of the 4th KH type I domain from human Vigilin · an experimental structure of the same protein · chain A against A, TM-score 0.06
- 2CTF · Solution structure of the 4TH kh type I domain from human vigilin · an experimental structure of the same protein · chain A against A, TM-score 0.06
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q00341
- Elsewhere: UniProt Q00341 · AlphaFold DB Q00341
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