MolNFT v1 · #485457 · protein
AlphaFold monomer V2.0 prediction for polyubiquitin-C (P0CG50)
P0CG50: “AlphaFold monomer V2.0 prediction for polyubiquitin-C (P0CG50)”. 1 pocket (best druggability 0.27). MolNFT v1 #485457 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P0CG50
- Type
- protein
- Length
- 734 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd91633319BDB0a92cbC4f08DeA734Bf74C030064
- Molecule
- Polyubiquitin-C
- UniProt
- P0CG50
- Pockets
- 1 · best druggability 0.27
Structure
1 distinct chain · 18% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polyubiquitin-C | protein | 734 | 18% helix, 35% strand | P0CG50 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 58 | 0.27 | 0.73 | 12 | empty |
Compared structures
- 6N5M · Crystal structure of abin-1 uban in complex with one M1-linked di- ubiquitin · an experimental structure of the same protein · chain A against A, TM-score 0.19
- 3WWQ · Crystal structure of FAAP20 ubz domain in complex with LYS63-linked diubiquitin · an experimental structure of the same protein · chain A against A, TM-score 0.10
- 3WWQ · Crystal structure of FAAP20 UBZ domain in complex with Lys63-linked diubiquitin · an experimental structure of the same protein · chain A against A, TM-score 0.10
- 4NQL · The crystal structure of the DUB domain of AMSH orthologue, Sst2 from S. pombe, in… · an experimental structure of the same protein · chain A against B, TM-score 0.10
- 4NQL · The crystal structure of the dub domain of amsh orthologue, SST2 from S. pombe, in… · an experimental structure of the same protein · chain A against B, TM-score 0.10
- 3WXG · Crystal structure of CYLD USP domain (C596A) in complex with Lys63-linked diubiquitin · an experimental structure of the same protein · chain A against B, TM-score 0.10
- 3WXG · Crystal structure of cyld usp domain (C596A) in complex with LYS63- linked diubiquitin · an experimental structure of the same protein · chain A against B, TM-score 0.10
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0CG50
- Elsewhere: UniProt P0CG50 · AlphaFold DB P0CG50
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