MolNFT v1 · #481916 · protein
AlphaFold monomer V2.0 prediction for probable tubulin--tyrosine ligase PBY1 (P38254)
P38254: “AlphaFold monomer V2.0 prediction for probable tubulin--tyrosine ligase PBY1 (P38254)”. 10 pockets (best druggability 0.73). MolNFT v1 #481916 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P38254
- Type
- protein
- Length
- 753 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xC993df6B6Eb50E5885B4dbc9C1205fD18d103dA4
- Molecule
- Probable tubulin--tyrosine ligase PBY1
- UniProt
- P38254
- Pockets
- 10 · best druggability 0.73
Structure
1 distinct chain · 29% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable tubulin--tyrosine ligase PBY1 | protein | 753 | 29% helix, 24% strand | P38254 |
Pockets
10 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 463 | 0.73 | 0.82 | 61 | empty |
| 2 | 199 | 0.60 | 0.82 | 27 | empty |
| 3 | 242 | 0.55 | 0.77 | 33 | empty |
| 4 | 127 | 0.51 | 0.80 | 21 | empty |
| 5 | 220 | 0.51 | 0.75 | 25 | empty |
Compared structures
- 6Y3Z · Crystal structure of the PBY1 ATP-grasp enzyme bound to the S. cerevisiae mRNA decapping… · an experimental structure of the same protein · chain A against P, TM-score 0.44
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P38254
- Elsewhere: UniProt P38254 · AlphaFold DB P38254
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