MolNFT v1 · #479944 · protein

AlphaFold monomer V2.0 prediction for tRNA threonylcarbamoyladenosine biosynthesis protein tsab (Q87RD1)

Q87RD1: “AlphaFold monomer V2.0 prediction for tRNA threonylcarbamoyladenosine biosynthesis protein tsab (Q87RD1)”. 2 pockets (best druggability 0.43). MolNFT v1 #479944 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: Q87RD1
Type: protein
Length: 233 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x4Ef77Afb5a3D9F41c95Be3227D1CC986CCb61835
Molecule: TRNA threonylcarbamoyladenosine biosynthesis protein tsab
UniProt: Q87RD1
Pockets: 2 · best druggability 0.43

Structure

1 distinct chain · 36% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	TRNA threonylcarbamoyladenosine biosynthesis protein tsab	protein	233	36% helix, 26% strand	Q87RD1

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	127	0.43	0.76	25	empty
2	127	0.42	0.76	27	empty

Compared structures

3R6M · Crystal structure of Vibrio parahaemolyticus YeaZ · an experimental structure of the same protein · chain A against A, TM-score 0.90
3R6M · Crystal structure of vibrio parahaemolyticus yeaz · an experimental structure of the same protein · chain A against A, TM-score 0.90

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q87RD1
Elsewhere: UniProt Q87RD1 · AlphaFold DB Q87RD1

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