MolNFT v1 · #472049 · protein
AlphaFold monomer V2.0 prediction for trafficking protein particle complex II-specific subunit 120 (Q04183)
Q04183: “AlphaFold monomer V2.0 prediction for trafficking protein particle complex II-specific subunit 120 (Q04183)”. 19 pockets (best druggability 0.80). MolNFT v1 #472049 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q04183
- Type
- protein
- Length
- 1,289 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xcE2eb976c31ec9e10e42B795e6729B4659076C74
- Molecule
- Trafficking protein particle complex II-specific subunit 120
- UniProt
- Q04183
- Pockets
- 19 · best druggability 0.80
Structure
1 distinct chain · 33% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Trafficking protein particle complex II-specific subunit 120 | protein | 1289 | 33% helix, 24% strand | Q04183 |
Pockets
19 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 819 | 0.80 | 0.83 | 81 | empty |
| 2 | 574 | 0.63 | 0.74 | 55 | empty |
| 3 | 446 | 0.61 | 0.76 | 39 | empty |
| 4 | 180 | 0.60 | 0.82 | 24 | empty |
| 5 | 62 | 0.53 | 0.87 | 16 | empty |
Compared structures
- 7E2C · Monomer of trappii (open) · an experimental structure of the same protein · chain A against J, TM-score 0.30
- 7E94 · Intact trappii (state II) · an experimental structure of the same protein · chain A against U, TM-score 0.30
- 7E93 · Intact trappii (state III). · an experimental structure of the same protein · chain A against J, TM-score 0.30
- 7E2D · Monomer of trappii (closed) · an experimental structure of the same protein · chain A against J, TM-score 0.29
- 7E8S · Intact trappii (state I). · an experimental structure of the same protein · chain A against J, TM-score 0.29
- 7E8T · Monomer of YPT32-trappii · an experimental structure of the same protein · chain A against J, TM-score 0.28
- 7EA3 · Intact YPT32-trappii (dimer). · an experimental structure of the same protein · chain A against J, TM-score 0.28
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q04183
- Elsewhere: UniProt Q04183 · AlphaFold DB Q04183
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