MolNFT v1 · #470379 · protein
AlphaFold monomer V2.0 prediction for pertussis toxin subunit 2 (P04978)
P04978: “AlphaFold monomer V2.0 prediction for pertussis toxin subunit 2 (P04978)”. 1 pocket (best druggability 0.34). MolNFT v1 #470379 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P04978
- Type
- protein
- Length
- 226 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xEa58c7534E5701aA8370E0fAEb19b7e14653e69c
- Molecule
- Pertussis toxin subunit 2
- UniProt
- P04978
- Pockets
- 1 · best druggability 0.34
Structure
1 distinct chain · 25% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pertussis toxin subunit 2 | protein | 226 | 25% helix, 32% strand | P04978 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 76 | 0.34 | 0.76 | 18 | empty |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 1PTO · The structure of a pertussis toxin-sugar complex as a model for receptor binding · an experimental structure of the same protein · chain A against H, TM-score 0.86
- 1PTO · The structure of a pertussis toxin-sugar complex as a model for receptor binding · an experimental structure of the same protein · chain A against H, TM-score 0.86
- 1BCP · Binary complex of pertussis toxin and ATP · an experimental structure of the same protein · chain A against B, TM-score 0.85
- 1BCP · Binary complex of pertussis toxin and ATP · an experimental structure of the same protein · chain A against B, TM-score 0.85
- 1PRT · The crystal structure of pertussis toxin · an experimental structure of the same protein · chain A against B, TM-score 0.85
- 1PRT · The crystal structure of pertussis toxin · an experimental structure of the same protein · chain A against B, TM-score 0.85
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04978
- Elsewhere: UniProt P04978 · AlphaFold DB P04978
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