MolNFT v1 · #463164 · protein
AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (A6VD86)
A6VD86: “AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (A6VD86)”. 11 pockets (best druggability 0.78). MolNFT v1 #463164 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- A6VD86
- Type
- protein
- Length
- 627 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5BeA89782341f98147F2D811B063F91F0aE7D7bF
- Molecule
- Phosphomethylpyrimidine synthase
- UniProt
- A6VD86
- Pockets
- 11 · best druggability 0.78
Structure
1 distinct chain · 47% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphomethylpyrimidine synthase | protein | 627 | 47% helix, 10% strand | A6VD86 |
Pockets
11 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 276 | 0.78 | 0.90 | 46 | empty |
| 2 | 378 | 0.72 | 0.84 | 47 | empty |
| 3 | 84 | 0.59 | 0.88 | 25 | empty |
| 4 | 89 | 0.42 | 0.79 | 19 | empty |
| 5 | 74 | 0.38 | 0.78 | 17 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A6VD86
- Elsewhere: UniProt A6VD86 · AlphaFold DB A6VD86
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