MolNFT v1 · #462884 · protein
AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (B0VDF1)
B0VDF1: “AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (B0VDF1)”. 3 pockets (best druggability 0.74). MolNFT v1 #462884 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- B0VDF1
- Type
- protein
- Length
- 625 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x4Ef77Afb5a3D9F41c95Be3227D1CC986CCb61835
- Molecule
- Phosphomethylpyrimidine synthase
- UniProt
- B0VDF1
- Pockets
- 3 · best druggability 0.74
Structure
1 distinct chain · 46% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphomethylpyrimidine synthase | protein | 625 | 46% helix, 11% strand | B0VDF1 |
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 671 | 0.74 | 0.80 | 77 | empty |
| 2 | 363 | 0.74 | 0.85 | 60 | empty |
| 3 | 103 | 0.63 | 0.88 | 30 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B0VDF1
- Elsewhere: UniProt B0VDF1 · AlphaFold DB B0VDF1
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