MolNFT v1 · #455024 · protein
AlphaFold monomer V2.0 prediction for valine--tRNA ligase (Q9HXH0)
Q9HXH0: “AlphaFold monomer V2.0 prediction for valine--tRNA ligase (Q9HXH0)”. 10 pockets (best druggability 0.80). MolNFT v1 #455024 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q9HXH0
- Type
- protein
- Length
- 950 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x35612D34a32C306CA4fc1edA9360D1F717e25950
- Molecule
- Valine--tRNA ligase
- UniProt
- Q9HXH0
- Pockets
- 10 · best druggability 0.80
Structure
1 distinct chain · 48% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Valine--tRNA ligase | protein | 950 | 48% helix, 19% strand | Q9HXH0 |
Pockets
10 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1080 | 0.80 | 0.82 | 69 | empty |
| 2 | 398 | 0.64 | 0.78 | 43 | empty |
| 3 | 277 | 0.63 | 0.80 | 27 | empty |
| 4 | 82 | 0.43 | 0.79 | 21 | empty |
| 5 | 105 | 0.42 | 0.77 | 17 | empty |
Compared structures
- 4XKZ · Crystal structure of the C-terminal anticodon loop binding domain of a valyl-tRNA… · an experimental structure of the same protein · chain A against A, TM-score 0.26
- 4XKZ · Crystal structure of the C-terminal anticodon loop binding domain of a valyl-tRNA… · an experimental structure of the same protein · chain A against A, TM-score 0.26
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HXH0
- Elsewhere: UniProt Q9HXH0 · AlphaFold DB Q9HXH0
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.